Contrasting microsatellite diversity in the evolutionary lineages of Phytophthora lateralis.
Identifieur interne : 000A41 ( Main/Exploration ); précédent : 000A40; suivant : 000A42Contrasting microsatellite diversity in the evolutionary lineages of Phytophthora lateralis.
Auteurs : Annamaria Vettraino [Italie] ; Clive M. Brasier [Royaume-Uni] ; Joan F. Webber [Royaume-Uni] ; Everett M. Hansen [États-Unis] ; Sarah Green [Royaume-Uni] ; Cecile Robin [France] ; Alessia Tomassini [Italie] ; Natalia Bruni [Italie] ; Andrea Vannini [Italie]Source :
- Fungal biology [ 1878-6146 ] ; 2017.
Descripteurs français
- KwdFr :
- Amérique du Nord (MeSH), Analyse de séquence d'ADN (MeSH), Chamaecyparis (microbiologie), Europe (MeSH), Phytophthora (classification), Phytophthora (génétique), Phytophthora (isolement et purification), Répétitions microsatellites (MeSH), Taïwan (MeSH), Variation génétique (MeSH), Évolution moléculaire (MeSH).
- MESH :
- génétique : Phytophthora.
- isolement et purification : Phytophthora.
- microbiologie : Chamaecyparis.
- classification : Amérique du Nord, Analyse de séquence d'ADN, Europe, Phytophthora, Répétitions microsatellites, Taïwan, Variation génétique, Évolution moléculaire.
English descriptors
- KwdEn :
- MESH :
- classification : Phytophthora.
- genetics : Phytophthora.
- isolation & purification : Phytophthora.
- microbiology : Chamaecyparis.
- Europe, Evolution, Molecular, Genetic Variation, Microsatellite Repeats, North America, Sequence Analysis, DNA, Taiwan.
Abstract
Following recent discovery of Phytophthora lateralis on native Chamaecyparis obtusa in Taiwan, four phenotypically distinct lineages were discriminated: the Taiwan J (TWJ) and Taiwan K (TWK) in Taiwan, the Pacific Northwest (PNW) in North America and Europe and the UK in west Scotland. Across the four lineages, we analysed 88 isolates from multiple sites for microsatellite diversity. Twenty-one multilocus genotypes (MLGs) were resolved with high levels of diversity of the TWK and PNW lineages. No alleles were shared between the PNW and the Taiwanese lineages. TWK was heterozygous at three loci, whereas TWJ isolates were homozygous apart from one isolate, which exhibited a unique allele also present in the TWK lineage. PNW lineage was heterozygous at three loci. The evidence suggests its origin may be a yet unknown Asian source. North American and European PNW isolates shared all their alleles and also a dominant MLG, consistent with a previous proposal that this lineage is a recent introduction into Europe from North America. The UK lineage was monomorphic and homozygous at all loci. It shared its alleles with the PNW and the TWJ and TWK lineages, hence a possible origin in a recent hybridisation event between a Taiwan lineage and PNW cannot be ruled out.
DOI: 10.1016/j.funbio.2016.10.002
PubMed: 28089043
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Bordeaux, BIOGECO, UMR 1202, F-33600, Pessac, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRA, UMR1202 BIOGECO, F-33610, Cestas, France; Univ. Bordeaux, BIOGECO, UMR 1202, F-33600, Pessac</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region><settlement type="city">Pessac</settlement></placeName></affiliation></author><author><name sortKey="Tomassini, Alessia" sort="Tomassini, Alessia" uniqKey="Tomassini A" first="Alessia" last="Tomassini">Alessia Tomassini</name><affiliation wicri:level="1"><nlm:affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100</wicri:regionArea><wicri:noRegion>01100</wicri:noRegion></affiliation></author><author><name sortKey="Bruni, Natalia" sort="Bruni, Natalia" uniqKey="Bruni N" first="Natalia" last="Bruni">Natalia Bruni</name><affiliation wicri:level="1"><nlm:affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100</wicri:regionArea><wicri:noRegion>01100</wicri:noRegion></affiliation></author><author><name sortKey="Vannini, Andrea" sort="Vannini, Andrea" uniqKey="Vannini A" first="Andrea" last="Vannini">Andrea Vannini</name><affiliation wicri:level="1"><nlm:affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy. Electronic address: vannini@unitus.it.</nlm:affiliation><country xml:lang="fr">Italie</country><wicri:regionArea>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100</wicri:regionArea><wicri:noRegion>01100</wicri:noRegion></affiliation></author></analytic><series><title level="j">Fungal biology</title><idno type="ISSN">1878-6146</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chamaecyparis (microbiology)</term><term>Europe (MeSH)</term><term>Evolution, Molecular (MeSH)</term><term>Genetic Variation (MeSH)</term><term>Microsatellite Repeats (MeSH)</term><term>North America (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (genetics)</term><term>Phytophthora (isolation & purification)</term><term>Sequence Analysis, DNA (MeSH)</term><term>Taiwan (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Amérique du Nord (MeSH)</term><term>Analyse de séquence d'ADN (MeSH)</term><term>Chamaecyparis (microbiologie)</term><term>Europe (MeSH)</term><term>Phytophthora (classification)</term><term>Phytophthora (génétique)</term><term>Phytophthora (isolement et purification)</term><term>Répétitions microsatellites (MeSH)</term><term>Taïwan (MeSH)</term><term>Variation génétique (MeSH)</term><term>Évolution moléculaire (MeSH)</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Phytophthora</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Chamaecyparis</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Chamaecyparis</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Europe</term><term>Evolution, Molecular</term><term>Genetic Variation</term><term>Microsatellite Repeats</term><term>North America</term><term>Sequence Analysis, DNA</term><term>Taiwan</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="fr"><term>Amérique du Nord</term><term>Analyse de séquence d'ADN</term><term>Europe</term><term>Phytophthora</term><term>Répétitions microsatellites</term><term>Taïwan</term><term>Variation génétique</term><term>Évolution moléculaire</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Following recent discovery of Phytophthora lateralis on native Chamaecyparis obtusa in Taiwan, four phenotypically distinct lineages were discriminated: the Taiwan J (TWJ) and Taiwan K (TWK) in Taiwan, the Pacific Northwest (PNW) in North America and Europe and the UK in west Scotland. Across the four lineages, we analysed 88 isolates from multiple sites for microsatellite diversity. Twenty-one multilocus genotypes (MLGs) were resolved with high levels of diversity of the TWK and PNW lineages. No alleles were shared between the PNW and the Taiwanese lineages. TWK was heterozygous at three loci, whereas TWJ isolates were homozygous apart from one isolate, which exhibited a unique allele also present in the TWK lineage. PNW lineage was heterozygous at three loci. The evidence suggests its origin may be a yet unknown Asian source. North American and European PNW isolates shared all their alleles and also a dominant MLG, consistent with a previous proposal that this lineage is a recent introduction into Europe from North America. The UK lineage was monomorphic and homozygous at all loci. It shared its alleles with the PNW and the TWJ and TWK lineages, hence a possible origin in a recent hybridisation event between a Taiwan lineage and PNW cannot be ruled out.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28089043</PMID><DateCompleted><Year>2017</Year><Month>09</Month><Day>26</Day></DateCompleted><DateRevised><Year>2017</Year><Month>12</Month><Day>27</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Print">1878-6146</ISSN><JournalIssue CitedMedium="Internet"><Volume>121</Volume><Issue>2</Issue><PubDate><Year>2017</Year><Month>02</Month></PubDate></JournalIssue><Title>Fungal biology</Title><ISOAbbreviation>Fungal Biol</ISOAbbreviation></Journal><ArticleTitle>Contrasting microsatellite diversity in the evolutionary lineages of Phytophthora lateralis.</ArticleTitle><Pagination><MedlinePgn>112-126</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S1878-6146(16)30155-6</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.funbio.2016.10.002</ELocationID><Abstract><AbstractText>Following recent discovery of Phytophthora lateralis on native Chamaecyparis obtusa in Taiwan, four phenotypically distinct lineages were discriminated: the Taiwan J (TWJ) and Taiwan K (TWK) in Taiwan, the Pacific Northwest (PNW) in North America and Europe and the UK in west Scotland. Across the four lineages, we analysed 88 isolates from multiple sites for microsatellite diversity. Twenty-one multilocus genotypes (MLGs) were resolved with high levels of diversity of the TWK and PNW lineages. No alleles were shared between the PNW and the Taiwanese lineages. TWK was heterozygous at three loci, whereas TWJ isolates were homozygous apart from one isolate, which exhibited a unique allele also present in the TWK lineage. PNW lineage was heterozygous at three loci. The evidence suggests its origin may be a yet unknown Asian source. North American and European PNW isolates shared all their alleles and also a dominant MLG, consistent with a previous proposal that this lineage is a recent introduction into Europe from North America. The UK lineage was monomorphic and homozygous at all loci. It shared its alleles with the PNW and the TWJ and TWK lineages, hence a possible origin in a recent hybridisation event between a Taiwan lineage and PNW cannot be ruled out.</AbstractText><CopyrightInformation>Copyright © 2016 British Mycological Society. Published by Elsevier Ltd. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Vettraino</LastName><ForeName>AnnaMaria</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brasier</LastName><ForeName>Clive M</ForeName><Initials>CM</Initials><AffiliationInfo><Affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Webber</LastName><ForeName>Joan F</ForeName><Initials>JF</Initials><AffiliationInfo><Affiliation>Forest Research, Alice Holt Lodge, Farnham, Surrey, GU10 4LH, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hansen</LastName><ForeName>Everett M</ForeName><Initials>EM</Initials><AffiliationInfo><Affiliation>Department of Botany and Plant Pathology, Oregon State University, Corvallis, OR 97331, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Green</LastName><ForeName>Sarah</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>Forest Research, Northern Research Station, Roslin, Scotland, EH259SY, UK.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Robin</LastName><ForeName>Cecile</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>INRA, UMR1202 BIOGECO, F-33610, Cestas, France; Univ. Bordeaux, BIOGECO, UMR 1202, F-33600, Pessac, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Tomassini</LastName><ForeName>Alessia</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bruni</LastName><ForeName>Natalia</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vannini</LastName><ForeName>Andrea</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>DIBAF, University of Tuscia, Via S. Camillo de Lellis, Viterbo, 01100, Italy. Electronic address: vannini@unitus.it.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>11</Month><Day>04</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Fungal Biol</MedlineTA><NlmUniqueID>101524465</NlmUniqueID></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D029780" MajorTopicYN="N">Chamaecyparis</DescriptorName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005060" MajorTopicYN="N">Europe</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019143" MajorTopicYN="N">Evolution, Molecular</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="Y">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="Y">Microsatellite Repeats</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009656" MajorTopicYN="N">North America</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010838" MajorTopicYN="N">Phytophthora</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D013624" MajorTopicYN="N">Taiwan</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="Y">Evolution</Keyword><Keyword MajorTopicYN="Y">Genetic variation</Keyword><Keyword MajorTopicYN="Y">Hybridization</Keyword><Keyword MajorTopicYN="Y">Introduction</Keyword><Keyword MajorTopicYN="Y">Microsatellite analysis</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>03</Month><Day>15</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2016</Year><Month>10</Month><Day>24</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>10</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2017</Year><Month>1</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2017</Year><Month>1</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28089043</ArticleId><ArticleId IdType="pii">S1878-6146(16)30155-6</ArticleId><ArticleId IdType="doi">10.1016/j.funbio.2016.10.002</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>France</li><li>Italie</li><li>Royaume-Uni</li><li>États-Unis</li></country><region><li>Aquitaine</li><li>Nouvelle-Aquitaine</li><li>Oregon</li></region><settlement><li>Pessac</li></settlement></list><tree><country name="Italie"><noRegion><name sortKey="Vettraino, Annamaria" sort="Vettraino, Annamaria" uniqKey="Vettraino A" first="Annamaria" last="Vettraino">Annamaria Vettraino</name></noRegion><name sortKey="Bruni, Natalia" sort="Bruni, Natalia" uniqKey="Bruni N" first="Natalia" last="Bruni">Natalia Bruni</name><name sortKey="Tomassini, Alessia" sort="Tomassini, Alessia" uniqKey="Tomassini A" first="Alessia" last="Tomassini">Alessia Tomassini</name><name sortKey="Vannini, Andrea" sort="Vannini, Andrea" uniqKey="Vannini A" first="Andrea" last="Vannini">Andrea Vannini</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Brasier, Clive M" sort="Brasier, Clive M" uniqKey="Brasier C" first="Clive M" last="Brasier">Clive M. Brasier</name></noRegion><name sortKey="Green, Sarah" sort="Green, Sarah" uniqKey="Green S" first="Sarah" last="Green">Sarah Green</name><name sortKey="Webber, Joan F" sort="Webber, Joan F" uniqKey="Webber J" first="Joan F" last="Webber">Joan F. Webber</name></country><country name="États-Unis"><region name="Oregon"><name sortKey="Hansen, Everett M" sort="Hansen, Everett M" uniqKey="Hansen E" first="Everett M" last="Hansen">Everett M. Hansen</name></region></country><country name="France"><region name="Nouvelle-Aquitaine"><name sortKey="Robin, Cecile" sort="Robin, Cecile" uniqKey="Robin C" first="Cecile" last="Robin">Cecile Robin</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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